Chen Lab Baylor College of Medicine

Mouse Retina Atlas

A unified single-cell atlas of the mouse retina using the most comprehensive approximately 250,000 single cells from our in-house experiments complementing public datasets. Cell labeling of 11 major types and over 120 subtypes form a unified single-cell reference for the mouse retina.

CELLxGENE

By integrating this new dataset with public datasets, we conducted an integrated analysis to construct the Mouse Retina Cell Atlas (MRCA) for wild-type mice, which encompasses over 323,000 single cells. The MRCA characterizes 11 major classes and 137 cell types.

UCSC Cell browser

UCSC Cell Browser provides specialized interfaces to explore multi-omic data of the Mouse Retina Cell Atlas (MRCA).

Spatial atlas of mouse retina

Spatial atlas of mouse retina in MERFISH experiment. The web service visualizes the spatial organization of mouse retina through cellxgene. Imputed data enable gene expression exploration of the whole transcriptome.